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2005 Honda Civic Cpe - Noisy trans

i just recently had a new clutch put in my 2005 honda civic ex because the noise it was making everyone said was my throw 0ut bearing or piolit bearing so now the clutch is put in and the noise is worst now i am thinking it has something to do with the transmission because the noise is real grindy sounding and the second gear sometimes pops out

Sorry Sherri, this is what happens when you tell a shop what you want done rather than requesting a diagnosis by a trained mechanic.
Did the shop that replaced the clutch provide you with any guidance as to the symptoms you are now experiencing.