Captive rotors were used on the Accords from the mid to late '90s and were out of use by either '98 or '99. I believe Civics have always had the “just fall off” rotors and doubt that Honda would start using this design on other, later model vehicles. I used to turn those Accord rotors by pulling the whole steering knuckle (which takes maybe 15 minutes per side) and chocking the works up on the lathe rather than pressing the hub apart and risk damaging the bearings. It looked kind of goofy, but worked very well.
Regarding this $1100 for pads and machine rotors, I would check your estimate, and if there is nothing but pads, machine rotors, and brake labor, I would run away and never go back. That is very high, even for east coast dealership work.