I have a 2003 Honda Civic with 5spd manual Transmission and 105,000 miles. My Mechanic says that the input shaft bearing is going (Makes noise when clutch is out then is quiet when clutch is put in). Can I wait to get it fixed when I need a new clutch or am I doing damage by not addressing it sooner?
That doesn’t sound like a pilot bearing. If the clutch pedal is up (released/engaged/foot off) then the input shaft is turning at the same rate as the crankshaft so the bearing is not moving in relation to those two things, so it should not make any noise.
Now if you push down on the clutch pedal and it makes noise, that could be the pilot bearing but it would more likely be the release bearing.